Zeng An, Chen Xu-zhou, Ji Yu-Zhu, et al. Cardiac Multiclass Segmentation Method Based on Self-attention and 3D Convolution[J]. 2023, 40(6): 168-175.DOI: 10.12052/gdutxb.230131.
Cardiac Multiclass Segmentation Method Based on Self-attention and 3D Convolution
Cardiac multi-class segmentation is of great significance in medical imaging
which can provide accurate cardiac structure information and assist clinical diagnosis. However
in the training of multi-class semantic segmentation models with high-resolution cardiac images
the loss of deep features due to multiple downsampling operations leads to the problems oforgan discontinuity and incorrect edge segmentation in the segmented cardiac. To address this
this paper proposes a 3DCSNet based on self-attention and 3D convolution for cardiac multi-class segmentation. Specifically
our proposed network introduces the 3D feature fusion module and a 3D spatial perception module into the segmentation network. The former 3D feature fusion module integrates self-attention and 3D convolution for parallel feature extraction
which is able to efficiently allocate the attentions weights within and between channels under the same dimension of the feature map. The latter 3D spatial perception module captures the positional correlation information between different dimensions by integrating the self-attention mechanism
avoiding the loss of important information in downsampling and further retaining the deep key features. Experimental results show that the proposed 3DCSNet outperforms several existing models on a publicly available 3D computed tomography image dataset (ImageCHD) .
关键词
Keywords
references
BHAT V, BELAVAL V, GADABANAHALLI K, et al . Illustrated imaging essay on congenital heart diseases: multim-odality approach part III: cyanotic heart diseases and complex congenital anomalies [J ] . Journal of Clinical and Diagnostic Research, 2016, 10(7): TE01-TE06.
NESSER H J, SUGENG L, CORSI C, et al . Volumetric analysis of regional left ventricular function with real-time three-dimensional echocardiography: validation by magnetic resonance an- d clinical utility testing [J ] . Heart, 2007, 93(5): 572-578.
KRIZHEVSKY A, SUTSKEVER I, HINTON G E. Imagenet classification with deep convolutional neural networks [J]. Advances in Neural Information Processing Systems, 2012, 25(2): 84-90.
RONNEBERGER O, FISCHER P , BROX T. U-net: convolutional networks for biomedical image segmentation[C]//Proceedings of International Conference on Medical Image Computing and Computer-Assisted Intervention. New York: Springer; 2015: 234–241.
CAO H, WANG Y, CHEN J, et al. Swin-unet: Unet-like pure transformer for medical image segmentation[C]//Proceedings of European Conference on Computer Vision. Cham: Springer Nature Switzerland, 2022: 205-218.
HATAMIZADEH A, TANG Y, NATH V, et al. Unetr: Transfor-mers for 3d medical image segmentation[C]//Proceedings of the IEEE/CVF Winter conference on Applications of Computer Vision. New Orleans: IEEE Computer Society 2022: 574-584.
LIU H, HU H, XU X, et al . Automatic left ventricle segmen-tation in cardiac MRI using topological stable-st ate thresholding and region restricted dynamic programming [J ] . Academic Radiology, 2012, 19(6): 723-731.
ULEN J, STRANDMARK P, Kahl F. An efficient optimization framework for multi-region segmentation based on lagrangian duality [J]. IEEE Transactions on Medical Imaging, 2012, 32(2): 178-188.
CHEN T, BABB J, KELLMAN P, et al . Semiautomated segmentation of myocardial contours for fast strain analysis in cine displacement-encoded MRI [J ] . IEEE Transactions on Medical Imaging, 2008, 27(8): 1084-1094.
AYED I B, CHEN H, PUNITHAKUMAR K, et al . Max-flow segmentation of the left ventricle by recovering subject-specificdistributions via a bound of the Bhatta-charyya measure [J ] . Medical Image Analysis, 2012, 16(1): 87-100.
PETITJEAN C, DACHER J N. A review of segmentation methods in short axis cardiac MR images [J]. Medical Image Analysis, 2011, 15(2): 169-184.
QUEIROS S, BARBOSA D, HEYDE B, et al . Fast automatic myocardial segmentation in 4D cine CMR datasets [J ] . Medical Image Analysis, 2014, 18(7): 1115-1131.
MITCHELL S C, BOSCH J G, LE LIEVELDT B P F, et al . 3D active appearance models: segmentation of cardiac MR and ultrasound images [J ] . IEEE Transactions on Medical Imaging, 2002, 21(9): 1167-1178.
BAI W, SHI W, LEDIG C, et al . Multiatlas segmentation withaugmented features for cardiac MR images [J ] . Medical Image Analysis, 2015, 19(1): 98-109.
LIN X, YU L, CHENG K T, et al . The lighter the better: Rethinking Transformers in medical image segmentation through adaptive pruning [J ] . IEEE Transactions on Medical Imaging, 2023, 42(8): 2325-2337.
VASWANI A, SHAZEER N, PARMAR N, et al. Attention is all you need[C]//Proceedings of Neural Information Processing Systems, Long Beach: MIT Press; 2017: 5998-6008.
LIU Z, LIN Y, CAO Y, et al. Swin transformer: Hierarchical vision transformer using shifted windows[C]//Proceedings of IEEE/CVF International Conference on Computer Vision. Montreal: IEEE Computer Society, 2021: 10012-10022.
ICEK , ABDULKADIR A, LIENKAMP S S, et al. 3D U-Net: learning dense volumetric segmentation from sparse annotation[C]//Proceedings of International Conference on Medical Image Computing and Computer-Assisted Intervention. New York: Springer; 2016: 424-432.
WU Y, LIAO K, CHEN J, et al . D-former: a u-shaped dilated transformer for 3d medical image segmentation [J ] . Neural Computing and Applications, 2023, 35(2): 1931-1944.
XU X, WANG T, ZHUANG J, et al. Imagechd: A 3D computedtomography image dataset for classification of congenital heart disease[C]//Proceedings of Medical Image Computing and Computer-Assisted Intervention. New York: Springer; 2020: 77-87.
VAN D W S, SCHONBERGER J L, NUNEZ J, et al . scikit-image: image processing in Python [J ] . PeerJ, 2014, 2: e453.